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RAFFAELE GIANCARLO

Pubblicazioni

Data Titolo Tipologia Scheda
2021 FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy Articolo in rivista Vai
2021 Alignment-free Genomic Analysis via a Big Data Spark Platform Articolo in rivista Vai
2020 The Alternating BWT: An algorithmic perspective Articolo in rivista Vai
2019 DNA combinatorial messages and Epigenomics: The case of chromatin organization and nucleosome occupancy in eukaryotic genomes Articolo in rivista Vai
2019 A new class of searchable and provably highly compressible string transformations Contributo in atti di convegno pubblicato in volume Vai
2019 Analyzing big datasets of genomic sequences: Fast and scalable collection of k-mer statistics Articolo in rivista Vai
2018 Informational and linguistic analysis of large genomic sequence collections via efficient Hadoop cluster algorithms Articolo in rivista Vai
2018 In vitro versus in vivo compositional landscapes of histone sequence preferences in eucaryotic genomes Articolo in rivista Vai
2018 Block Sorting-Based Transformations on Words: Beyond the Magic BWT Contributo in atti di convegno pubblicato in volume Vai
2017 Network Centralities and Node Ranking Capitolo o Saggio Vai
2017 Computation Cluster Validation in the Big Data Era Capitolo o Saggio Vai
2017 MapReduce in Computational Biology Via Hadoop and Spark Capitolo o Saggio Vai
2017 Mapreduce in computational biology - A synopsis Capitolo o Saggio Vai
2017 An effective extension of the applicability of alignment-free biological sequence comparison algorithms with Hadoop Articolo in rivista Vai
2017 FASTdoop: A versatile and efficient library for the input of FASTA and FASTQ files for MapReduce Hadoop bioinformatics applications Articolo in rivista Vai
2016 The intrinsic combinatorial organization and information theoretic content of a sequence are correlated to the DNA encoded nucleosome organization of eukaryotic genomes Articolo in rivista Vai
2016 Table Compression Capitolo o Saggio Vai
2016 Indexed Two-Dimensional String Matching Capitolo o Saggio Vai
2015 Epigenomic k-mer dictionaries: shedding light on how sequence composition influences in vivo nucleosome positioning Articolo in rivista Vai
2015 Alignment-Free Sequence Comparison over Hadoop for Computational Biology Contributo in atti di convegno pubblicato in volume Vai
2015 Bayesian versus data driven model selection for microarray data Articolo in rivista Vai
2015 ValWorkBench: An open source Java library for cluster validation, with applications to microarray data analysis. Articolo in rivista Vai
2014 Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies Articolo in rivista Vai
2014 GIMT: A tool for ontology and goal modeling in BDI Multi-Agent Design Proceedings (TIPOLOGIA NON ATTIVA) Vai
2013 Algorithmics for the Life Sciences Capitolo o Saggio Vai
2013 The Three Steps of Clustering in the Post-Genomic Era Capitolo o Saggio Vai
2013 A methodology to assess the intrinsic discriminative ability of a distance function and its interplay with clustering algorithms for microarray data analysis Articolo in rivista Vai
2013 Forewords-Special Issue Combinatorial Pattern Matching 2011 Articolo in rivista Vai
2012 Textual data compression in computational biology: Algorithmic techniques. Articolo in rivista Vai
2012 Stability-Based Model Selection for High Throughput Genomic Data: An Algorithmic Paradigm Capitolo o Saggio Vai
2012 Algorithmic paradigms for stability-based cluster validity and model selection statistical methods, with applications to microarray data analysis. Articolo in rivista Vai
2011 Algoritmica Per Le Scienze Della Vita Capitolo o Saggio Vai
2011 Novel Combinatorial and Information Theoretic Alignment Free Distances for Biological Data Mining Capitolo o Saggio Vai
2011 Speeding up the Consensus Clustering methodology for microarray data analysis Articolo in rivista Vai
2011 Preface Capitolo o Saggio Vai
2011 The Three Steps of Clustering in the Post-Genomic Era: A Synopsis Contributo in atti di convegno pubblicato in volume Vai
2011 Genome-wide characterization of chromatin binding and nucleosome spacing activity of the nucleosome remodelling ATPase ISWI Articolo in rivista Vai
2010 Distance Functions, Clustering Algorithms and Microarray Data Analysis Contributo in atti di convegno pubblicato in volume Vai
2010 Functional Information, Biomolecular Messages and Complexity of BioSequences and Structures Proceedings (TIPOLOGIA NON ATTIVA) Vai
2009 Statistical Indexes for Computational and Data Driven Class Discovery in Microarray Data Capitolo o Saggio Vai
2009 Basic Statistical Indices for SeqAn Capitolo o Saggio Vai
2009 Textual Data Compression In Computational Biology: A synopsis Articolo in rivista Vai
2009 The Myriad Virtes of Wavelet Trees Articolo in rivista Vai
2008 A Tutorial on Computational Cluster Analysis with Applications to Pattern Discovery in Microarray Data Articolo in rivista Vai
2008 Periodicity and repetitions in parameterized strings Articolo in rivista Vai
2008 Grid-K: A Cometa Virtual Organization Service for Compressio-Based Classification of Biological Sequences and Structures Proceedings (TIPOLOGIA NON ATTIVA) Vai
2008 New Results in Finding Common Neighborhoods in Massive Graphs in the Data Streaming Model Articolo in rivista Vai
2008 SAIL: String Algorithms, Information and Learning, Preface and Special Issue Articolo in rivista Vai
2008 Algorithms in Bioinformatics Articolo in rivista Vai
2008 Table Compression Capitolo o Saggio Vai
2008 Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer Articolo in rivista Vai
2008 2D-Pattern Indexing Capitolo o Saggio Vai
2007 From First Principles to the Burrows and Wheeler Transform and Beyond, via Combinatorial Optimization Articolo in rivista Vai
2007 A basic analysis toolkit for biological sequences Articolo in rivista Vai
2007 $O(n^2 log n)$ Time On-line Construction of Two-Dimensional Suffix Trees Articolo in rivista Vai
2007 Forewords Articolo in rivista Vai
2007 Articles selected from posters presented at the Tenth Annual International Conference on Research in Computational Biology - Preface and Special Issue Articolo in rivista Vai
2007 Compression-Based Classification of Biological Sequences and Structures via the Universal Similarity Metric: Experimental Assessment Articolo in rivista Vai
2006 The Engineering of a Compression Booster: Theory Vs Practice in BWT Compression Articolo in rivista Vai
2006 Differential expression of proteolytic enzymes during epithelial-mesenchymal transaction of endothelial cells. Proceedings (TIPOLOGIA NON ATTIVA) Vai
2006 The Myriad Virtues of Suffix Trees Capitolo o Saggio Vai
2006 Differential Expression of Proteolytic Enzymes During Epithelia-Mesenchyma Transcation of Endothelial Cells Articolo in rivista Vai
2005 An O(n^2log n) Time on-line construction of two-dimensional suffix trees Articolo in rivista Vai
2005 GenClust: A Genetic Algorithm for Clustering Gene Expression Data Articolo in rivista Vai
2005 Pattern Discovery in the Post-Genome Articolo in rivista Vai
2005 Boosting Textual Compression in Optimal Linear Time Articolo in rivista Vai
2004 Permutations, Partitions and Combinatorial Compression Boosting Articolo in rivista Vai
2004 Pattern Matching Algorithms Articolo in rivista Vai
2004 Longest Motifs with a Functionally Equivalent Central Block Articolo in rivista Vai